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FRATEURIA AURANTIA PDF

genus and species name, Frateuria aurantia, for strains IF0 ,,, and to Strain IF0 was found to be a strain of. Gluconobacter. Frateuria aurantia DSM (Project ID: ). Product: High Quality Draft. Proposal Name: GEBA Proposal (Proposal ID: ). Project PI: Jonathan Eisen. Potassium-mobilizing bacterial strain Frateuria aurantia was examined for Bacterial strain F. aurantia was able to enhance potassium uptake efficiently in.

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Table 2 Genome sequencing project information.

Appl Environ Microbiol ; Chromatin structure and dynamics. Acknowledgements We would like to gratefully acknowledge the help of Markus Kopitz for growing F.

K-Mobil (Potash Mobilizing bacteria): Frateuria aurantia

Syst Appl Microbiol ; A summary of the project information is shown in Table 2. Graphical map of the chromosome. An empirical test of the midpoint rooting method. Phrap and Phred for Windows.

Frateuria aurantia – Wikipedia

Table 1 Classification and general features of F. All general aspects of library construction and sequencing can be found at the JGI website [ 33 ]. TAS [ 25 ]. Chemotaxonomy Besides trace amounts of diploptene and rearranged compounds like fernene [ 3 ], the main lipids isolated from DSM T are iso -branched fatty acids and triterpenoids of the hopane family, such as bacteriohopanetetrol and derived hopanoid.

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Newbler parameters are -consed -a 50 -l -g -m -ml The fratfuria project is deposited in the Genomes On Line Database [ 14 ] and the complete genome sequence frateura deposited in GenBank.

K-Mobil (Potash Mobilizing bacteria): Frateuria aurantia

The most frequently occurring genera were Dyella Illumina GAii sequencing data 2, Validation of publication of new names and new combinations previously effectively published outside the IJSEM. TAs [ 19 ].

BrowserTool takes expertise out of the database and puts it right in the browser. The initial Newbler assembly consisting of 36 contigs in one scaffold was converted into a phrap [ 34 ] assembly by making fake reads from the consensus, to collect the read pairs in the paired end library. An effective tool for using ultra short reads in microbial genome assembly and finishing.

Illumina reads were also used to fraturia potential base errors and increase consensus quality using a software Polisher developed at JGI [ 37 ]. Evidence codes – TAS: An algorithm for suffix stripping.

They are oxidase positive and catalase negative [ 1 ]; physiological features and antibiotic susceptibilities were reported in great detail in [ 1 ]. Cells occur singly or in pairs, rarely in filaments [ 1 ]. Influence of the temperature and the growth phase on the hopanoids and ayrantia acids content of Frateuria aurantia DSMZ General function prediction only. Zerbino DR, Birney E. How many bootstrap replicates are necessary?

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Energy production and conversion. Non-traceable Author Statement i. Besides trace amounts of diploptene and rearranged compounds like fernene [ 3 ], the main lipids isolated from DSM T are iso -branched fatty acids and triterpenoids of the hopane family, such as bacteriohopanetetrol and derived hopanoid.

Frateuria aurantia

Possible mis-assemblies were corrected with gapResolution [ 33 ], Dupfinisher [ 36 ], or sequencing cloned bridging PCR fragments with subcloning. We would like to gratefully acknowledge the help of Markus Kopitz for growing F. Nat Biotechnol ; Phylogenetic tree highlighting the position of F. Cells grow well at pH 3. Isolation and phylogenetic characterization of acidophilic microorganisms indigenous to acidic drainage waters at an abandoned Norwegian copper mine.

Han C, Chain P. Multiple sequence alignment using partial order graphs. The strain is of interest because of its triterpenoids hopane family. Table 4 Number of genes associated with the general COG functional categories.